Md. Hridoy Ahmed

Molecular Biology and Bioinformatics Enthusiast

Skills


 

🧪 Wet-Lab Skills

 


 

Core Molecular Techniques


  • Sanger Sequencing (sample preparation → cartridge loading → sequencing → chromatogram analysis)
  • DNA & Protein Isolation
  • Gel Electrophoresis (Agarose & PAGE)
  • Polymerase Chain Reaction (PCR) & qPCR
  • Centrifugation & Sample Fractionation
  • Karyotyping
  • Plant Extract Preparation
  • Organic Compound Isolation & Fractionation

Biochemical & Cellular Assays


  • Phytochemical Screening
  • Anti-inflammatory Assays
    • Protein Denaturation Assay
    • Membrane Stabilisation Assay
  • Determination of Blood Components

 

🧬 Dry-Lab / Computational Biology Skills



 

Molecular Docking & Drug Discovery


  • AutoDock • PyRx • Schrodinger Suite
  • GROMACS (MD Simulation)
  • LigandScout
  • Discovery Studio
  • SwissADME / SwissModel
  • MarvinJS
  • GaussView • Gaussian • Gabedit

Bioinformatics & Structural Tools

 
  • Cytoscape (Network Analysis)
  • STRING (Protein Interactions)
  • GEO • ArrayExpress (Transcriptomics)
  • NAMD • VMD
  • MEGA (Phylogenetics)
  • IPA (Pathway Analysis)
  • DFT-based analysis

Statistical & Visualization Tools


  • GraphPad Prism
  • OriginPro
 

 

💻 Programming, Operating Systems & Software Tools

 

Programming & Script-Based Tools

 
  • R (Data analysis • ggplot2 • Bioconductor packages)
  • Python (Biopython, Pandas, Numpy)
  • HTML/CSS
  • SPSS

Operating Systems

 
  • Linux (Ubuntu) – command-line workflow, bash scripting
  • macOS
  • Windows

Documentation & Productivity

 
  • LaTeX
  • MS Word, Excel, PowerPoint
 
 

🎓 Additional Training & Certifications

🧬 Sanger Sequencing Training — FGPL, University of Chittagong

  • Sample preparation & purification
  • Cartridge filling
  • Sequence loading & run execution
  • Chromatogram interpretation
  • Troubleshooting workflow

🔬 Research Methodology — BRAC University (Red & White)

  • Research proposal writing
  • Scientific project design
  • Basic bioinformatics tool

🩺 Diabetes Course — University of Copenhagen (Coursera)

  • Diabetes pathophysiology
  • Clinical management & treatment strategies
  • Epigenetic factors
  • Diet–exercise interactions

💡 Advanced Bioinformatics & Data Analysis — NextGenHelper, India

  • Biological network construction & Cytoscape
  • Microbiome data analysis
  • Python for bioinformatics
  • Biopython pipeline development
  • R + RStudio for statistical analysis
  • ggplot2 visualization
  • Linux command-line workflows
  • NGS Techniques
    • Data filtering
    • Whole genome assembly
    • Genome annotation
    • RNA-seq analysis
    • GWAS analysis
    • Variant analysis

💻 Linux Training — Bioscience Factory Research Center, Bangladesh

  • Linux essentials
  • Bash scripting for biologists
  • File/data handling
  • Pipeline automation