Md. Hridoy Ahmed

Molecular Biology and Bioinformatics Enthusiast

Projects


 Academic Projects 

  • MS thesis, Title: “From Bacterial Invasion to Periapical Lesions: The Epidemiology and Molecular Mechanisms Underlying Apical Periodontitis in Bangladeshi Populations with a Focus on MMP-3 gene.”
Learning outcomes: DNA extraction, PCR, Gel electrophoresis, DNA quantification, Sanger sequencing, Variation analysis.
  • UnderGrad project, Title: “A Structure-Oriented Drug Design Strategy for the Discovery of Antiviral Compounds Aiming at the Chikungunya Virus RdRp Protein”
Learning outcomes: Research Proposal Writing, Research Project Design, Literature Review, Pilot Study, Survey Data Collection, Manuscript Writing, ADMET analysis, Docking, Molecular Modeling, Molecular Dynamics Simulation, Humo Lumo, DFT analysis. 

Under Review

 
Project Designer & Team Leader | Conducted by BioPC | Collaborated with India, Pakistan and Saudi Arabia 
  • In silico investigations identified Butyl Xanalterate to competently target CK2α (CSNK2A1) for therapy of prostate cancer
Journal of (Submitted on: 02/07/24) 
  • Computational approach to investigate bioactive molecules from Saussurea Costus plant as MPXV inhibitors using reverse docking, molecular dynamics simulation, and pharmacokinetic ADMET parameters.
Journal of (Submitted on: 10/09/24) 
  • Genome Wide Study For Annotating Functional Pathway of 121 Established Breast Cancer Risk Variants.
Journal of (Submitted on: 23/09/24) 
  • An Immuno-informatics study targets 20 membrane glycoproteins for B cell and T cell epitope prediction and multi-epitope vaccine design against the Monkeypox virus.
Journal of (Submitted on: 30/09/24) 
  • A computational approach for annotation of hypothetical proteins and reverse vaccinology techniques to design multi-epitope vaccine against Chlamydia trachomatis
Journal of (Submitted on: 05/10/24) 
  • An Immuno-informatics approach for annotation of hypothetical proteins, T cell and B cell epitope prediction and reverse vaccinology techniques to design multi-epitope vaccine against Streptococcus pyogenes
Journal of (Submitted on: 15/10/24)